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Mozambique channel - hidden Islands & remote Ecosystems

Hidden Islands & Remote Ecosystems in the Mozambique Channel


The Mozambique Channel (MC), known primarily as a turbulent marine highway, harbors some of the world's most pristine and scientifically intriguing island systems and deep-sea environments. These hidden ecosystems, ranging from isolated atolls to submerged continental fragments, serve as vital biodiversity repositories and laboratories for marine science, often remaining largely untouched by industrial development.

The Scattered Sentinels: France's Island Territories

The French Scattered Islands (Îles Éparses), located centrally within the Mozambique Channel, are a cluster of small islands and atolls—including Europa, Juan de Nova, and Glorieuses—whose strategic isolation and rigorous protection ensure their exceptional natural integrity. Though none have a permanent population, these islands are critical to environmental preservation in the region.

Europa Island: A Sanctuary of Giants

Europa Island, an oceanic low island located in the southern Mozambique Channel, is a remote Marine Protected Area (MPA).

  • Geological Intrigue: Despite its remote oceanic setting, the crust beneath Europa Island appears to be of oceanic origin. Europa, along with Bassas da India, Hall Tablemount, and Jaguar Seamount, constitutes an archipelago of volcanic origin.
  • Turtle Metropolis: Europa is celebrated for hosting the most significant green turtle nesting site in the entire Indian Ocean. These islands also harbor the second largest colony of great frigate birds in the Western Indian Ocean (WIO).
  • Shark Conservation Hub: The surrounding reefs of Europa are virtually pristine, supporting abundant marine life and acting as a crucial area for shark conservation. Surveys recorded 15 shark species here since 1952. The island's shallow lagoon functions as a nursery ground for the blacktip reef shark (Carcharhinus melanopterus). Furthermore, large schooling groups of scalloped hammerhead sharks (Sphyrna lewini) were observed along the reef slopes. The vicinity of seamounts near Europa is hypothesized to favor this schooling behavior, offering protection and resting places.

Juan de Nova and Glorioso Islands: Remnants of Gondwana

Other French islands reveal deep geological and biological mysteries:

  • Juan de Nova Island: Located in the central MC. Scientific analysis suggests the crust beneath Juan de Nova (along with Mayotte) is likely continental in nature. This indicates that the island may have formed on an isolated continental block abandoned during the Gondwana breakup and the opening of the Mozambique Channel. This geology provides a unique evolutionary setting.
  • Scientific Frontier: Scientists visit Juan de Nova three or four times annually to study its ecosystem, although the inventory of its biodiversity (especially genetics) is only in its earliest stages, underscoring how much remains to be explored. Its coral reefs form an important part of the island's biodiversity.
  • Glorioso Islands and Banc du Geysir: The Glorioso archipelago is designated as a species sanctuary and refuge for biodiversity where fishing is prohibited. The associated Banc du Geysir is known for exceptional natural patrimony, supporting green turtles and 1,338 species, 13% of which are listed as endangered.

The Mozambican Archipelagos: The Primeiras, Quirimbas, and Bazaruto Archipelagos as Marine Sanctuaries


On the western side of the channel, Mozambique's coastal island chains represent vast marine protected areas, though their remote nature often results in significant data gaps.


Primeiras and Segundas Archipelago (PSEPA)

This chain of ten sparsely inhabited barrier islands, located off the coast of Zambezia Province, forms the largest marine protected area in Africa, covering over one million hectares.

  • Ecological Crossroads: PSEPA is a unique area of considerable biological richness, marking the meeting point of the northern coral coast and the southern swamp coast.
  • Scientific Rarity: The archipelago is recognized as one of the most important areas for sea turtle reproduction in the eastern Indian Ocean. The southern islands support Mozambique's largest nesting grounds for green sea turtles, and they are also used by hawksbill and olive Ridley sea turtles for foraging. Logistical challenges have historically hindered research activities in this area, meaning extensive information is still required to provide a sound basis for management and conservation.
  • The Living Fossil: This area is a prime habitat for the African Coelacanth, often referred to as a "living fossil," and coelacanths have been captured in this area.

Quirimbas and Bazaruto: Pristine Reefs

The Quirimbas Archipelago, stretching north of Pemba, is recognized as a UNESCO Biosphere Reserve. It offers remote and pristine coral gardens


Similarly, the Bazaruto Archipelago, a collection of six islands off the southern coast, is protected as the Bazaruto Archipelago National Park. Its status gives researchers unprecedented access to protected waters adjacent to the deep Mozambique Channel.

  • The islands of Bazaruto and Santa Carolina were once mainland peninsulas that were severed and isolated by the action of wind and sea.

A Natural Laboratory: Complex Topography, Unique Gas Seeps, and Uncataloged Deep-Sea Fauna


The deep, turbulent waters of the Mozambique Channel, reaching depths of 3,292 meters, hold ecosystems that are the subject of intense, yet very recent, scientific investigation.

  • Complex Topography: The channel features deep oceanic habitats, submarine canyons, guyots, and seamounts. Deepwater coral and rugose reef structures have been observed at depths reaching at least 1,510 meters.
  • Gas Seeps and Pockmarks: One of the most intriguing discoveries is the presence of gas seeps and associated low-activity bathyal Pockmarks (depressions in the seafloor at depths around 789 m). These pockmarks are characterized by unique, harsh physicochemical conditions, including anoxic and sulphuric sediments, and gas bubbling confirms current emissions. These ecosystems are classified as critical habitats, although their full locations are not yet entirely mapped.
  • Microscopic Frontiers: Scientific analysis focusing on these deep-sea sediments utilized metabarcoding (a novel approach for biogeographical studies) and revealed a high diversity of free-living marine nematodes. Researchers found that over 80% of microscopic fauna species encountered were unique within each sampled area, and there is a documented deficit of reference sequences for deep-sea nematodes in public databases, underscoring the novelty of these findings and the vast amount of deep-sea life yet to be cataloged. The presence of deep-sea vents and seamounts ensures a dynamic habitat for these lifeforms.

These remote island chains and deep-sea features act as natural laboratories. They allow scientists to study fundamental oceanographic processes, such as how the unique eddy circulation in the channel leads to high genetic connectivity and retention of species, potentially promoting endemicity by trapping larvae. However, the vast gaps in deep-sea biodiversity data mean that these ecosystems remain a scientific frontier, harboring hidden life and unique evolutionary history.

Background : What is a gas seep ?

A gas seep (also known as a cold seep) is essentially a natural geological leak on the ocean floor, where fluids and gases are continuously pushed up and released from the seabed.

Think of it as a deep-sea chimney releasing chemical resources, not heat (like a hot vent).

Here is a simple breakdown of what a gas seep is, based on its characteristics in the Mozambique Channel region:

  1. What is leaking? The primary substances discharged are methane (the main component of natural gas) and reduced sulfur.
  2. What does it look like? The continuous escape of these fluids often creates depressions or dimples on the seafloor called pockmarks. In the Mozambique Channel, these have been identified as low-activity bathyal pockmarks at depths of about 789 meters.
  3. How do we know it's active? Current emissions have been confirmed when gas bubbling was recorded above a pockmark in the MC.
  4. What is the environment like? The chemical substances make the environment around the seep very harsh. The sediments here have low oxygen and high hydrogen sulfide concentrations, resulting in an environment characterized by anoxic and sulphuric sediments.
  5. What lives there? Despite the toxic, oxygen-poor environment, gas seeps support unique and specialized deep-sea life. Tiny, free-living marine creatures called nematodes (microscopic worms) are the dominant small animal group (meiofaunal taxon) found in these pockmarks. Some specialized nematodes have even developed symbiotic relationships with sulfur-oxidizing bacteria, allowing them to use the high chemical concentration in the sulphuric sediments as a food source and detoxification mechanism.

In short, a gas seep is a chemically hostile, deep-sea environment sustained by methane and sulfur leaks from the earth, acting as a specialized habitat for organisms adapted to these extreme conditions.